Class: PathwayStep
http://www.biopax.org/release/biopax-level3.owl#PathwayStep
Annotations (1)
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comment "Definition: A step in an ordered pathway.
Rationale: Some pathways can have a temporal order. For example, if the pathway boundaries are based on a perturbation phenotype link, the pathway might start with the perturbing agent and end at gene expression leading to the observed changes. Pathway steps can represent directed compound graphs.
Usage: Multiple interactions may occur in a pathway step, each should be listed in the stepProcess property. Order relationships between pathway steps may be established with the nextStep slot. If the reaction contained in the step is a reversible biochemical reaction but physiologically has a direction in the context of this pathway, use the subclass BiochemicalPathwayStep.
Example: A metabolic pathway may contain a pathway step composed of one biochemical reaction (BR1) and one catalysis (CAT1) instance, where CAT1 describes the catalysis of BR1. The M phase of the cell cycle, defined as a pathway, precedes the G1 phase, also defined as a pathway." (string)
Superclasses (1)
Disjoints (14)
BioSource,
ChemicalStructure,
ControlledVocabulary,
DeltaG,
EntityFeature,
EntityReference,
Evidence,
ExperimentalForm,
KPrime,
Provenance,
Score,
SequenceLocation,
Stoichiometry,
Xref
Usage (6)