SBPAX3 in N3

From BiopaxWiki
Revision as of 17:44, 31 May 2011 by Curoli (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
@prefix :        <http://vcell.org/sbpax3#> .
@prefix rdfs:    <http://www.w3.org/2000/01/rdf-schema#> .
@prefix bp:      <http://www.biopax.org/release/biopax-level3.owl#> .
@prefix xsd:     <http://www.w3.org/2001/XMLSchema#> .
@prefix owl:     <http://www.w3.org/2002/07/owl#> .
@prefix uome-core:  <http://vcell.org/uome/expressions/#> .
@prefix rdf:     <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .

:hasNumber
      a       owl:DatatypeProperty ;
      rdfs:comment """The number representing this measurable systems biology entity.
Example: a concentration of 5 mol/l would have the number 5 together with the unit string \"mol/l\""""^^xsd:string ;
      rdfs:domain :SBEntity ;
      rdfs:range xsd:float .

<http://vcell.org/sbpax3>
      a       owl:Ontology ;
      owl:imports <http://www.biopax.org/release/biopax-level3.owl> , <http://vcell.org/uome/expressions/> .

:sbSubEntity
      a       owl:ObjectProperty ;
      rdfs:comment """A systems biology entity that is a part, attribute or subset of this systems biology entity.
Examples: rate law of an interaction; parameters of a rate law."""^^xsd:string ;
      rdfs:domain :SBEntity ;
      rdfs:range :SBEntity .

:SBEntity
      a       owl:Class ;
      rdfs:comment """An entity that can be characterized by one or more systems biology terms.
Examples: a BioPAX entity; a rate law or a parameter in a particular instance."""^^xsd:string .

:SBState
      a       owl:Class ;
      rdfs:comment "An entity that describes the state of a system. This state can be described by sub elements, whcih makes it usefull to group data that correspond to the same state."^^xsd:string ;
      rdfs:subClassOf :SBEntity .

:hasUnit
      a       owl:ObjectProperty ;
      rdfs:comment """An instance of uome-core:UnitOfMeasurement representing the unit connected to this measurable systems biology entity.
Examples: uome-list:Metre, uome-list:Kilogram, uome-list:MicrogramPerMillilitre"""^^xsd:string ;
      rdfs:domain :SBMeasurable ;
      rdfs:range uome-core:UnitOfMeasurement .

:SBMeasurable
      a       owl:Class ;
      rdfs:comment """An entity that can be characterized by one or more systems biology terms and that can be represented by a number and a unit.
Example: a parameter in a particular instance."""^^xsd:string ;
      rdfs:subClassOf :SBEntity .

:sbTerm
      a       owl:ObjectProperty ;
      rdfs:comment """The systems biology term that this entity is an instance of.
Examples: an SBO term; an SBML element name."""^^xsd:string ;
      rdfs:domain :SBEntity ;
      rdfs:range :SBVocabulary .

:SBVocabulary
      a       owl:Class ;
      rdfs:comment """Controlled vocabulary that describes a systems biology concept, such as a Systems Biology Ontology term.
Examples: an SBO term; an SBML element name"""^^xsd:string ;
      rdfs:subClassOf bp:ControlledVocabulary .