BioPAX is a collaborative effort to create a data exchange format for biological pathway data. Get involved...

BioPAX Level 3, Version 0.92 (Release Candidate 3)

BioPAX Level 3 covers metabolic pathways, molecular interactions, signaling pathways (including molecular states and generics), gene regulation and genetic interactions. BioPAX Level 3 is currently under development and review by pathway databases and is scheduled for release by mid-2008. OWL file: http://www.biopax.org/release/biopax-level3.owl Documentation: biopax-level3-documentation.pdf OWL Docs: Auto-generated ontology documentation

BioPAX Level 2, Version 1.0

BioPAX Level 2 covers metabolic pathways, molecular interactions and protein post-translational modifications and is backwards compatible with Level 1. Future levels will expand support for signaling pathways, gene regulatory networks and genetic interactions. More... OWL file: http://www.biopax.org/release/biopax-level2.owl Documentation: biopax-level2-documentation.pdf OWL Docs: Auto-generated ontology documentation Bundle download: biopax-level2.zip

Level 2 Data
Reactome is available in BioPAX Level 2 format. BioCyc is available in BioPAX Level 2 format. INOH is available in BioPAX Level 2 format. BioModels is available in BioPAX Level 2 format. Nature/NCI Pathway Interaction Database is available in BioPAX Level 2 format. Cancer Cell Map is available in BioPAX Level 2 format. Pathway Commons is available in BioPAX Level 2 format.

BioPAX Level 1, Version 1.4
BioPAX Level 1 represents metabolic pathway information. More... OWL file: http://www.biopax.org/release/biopax-level1.owl Documentation: biopax-level1-documentation.pdf Bundle download: biopax-level1.zip OWL Docs: Auto-generated ontology documentation

Level 1 Data
BioCyc is available in BioPAX Level 1 format. KEGG is available in BioPAX Level 1 format.

The BioPAX project is funded in part by U.S. Department of Energy Workshop Grant #DE-FG02-04ER63931 and by Award Number P41HG004118 from the National Human Genome Research Institute