BioPAX : Biological Pathways Exchange
BioPAX is a standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Specifically, BioPAX supports data exchange between pathway data groups and thus reduces the complexity of interchange between data formats by providing an accepted standard format for pathway data. It is an open and collaborative effort by the community of researchers, software developers, and institutions. BioPAX is defined in OWL DL and is represented in the RDF/XML format. BioPAX Paper was published in Nature Biotechnology in 2010.
- The BioPAX Forum (BioPAX Discussion Google Group).
- BioPAX Level3 Announcenment
- BioPAX Specification and Documentation
- BioPAX Workgroups
- BioPAX Proposals
- Next Workshop: Harmony 2013
- Last Workshop: COMBINE 2012 Toronto, ON
- Wiki Pages by Category
- For biologists and computational biologists interested in downloading and analyzing pathway data
- Level 3 Ontology (browse) covers metabolic pathways, molecular interactions, signaling pathways (including molecular states and generics), gene regulation and genetic interactions.
- Level 2 Ontology (browse) Support metabolic pathways, molecular interactions, protein post-translational modifications and the PSI-MI
- Level 1 Ontology (browse) Supports metabolic pathways
- Pathways in BioPAX format
- Biological software supporting BioPAX
- For developers interested in building software using BioPAX
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